I want Scoary to install a vcf2scoary command for converting haploid VCF files into the Roary/Scoary-style…

I want Scoary to install a vcf2scoary command for converting haploid VCF files into the Roary/Scoary-style…: a task in MiMo-V2.6-RL-harbor-code: MiMo-V2.6-RL Code (Harbor) (Harbor dataset). For a VCF whose metadata includes fileformat=VCFv4.1 and FORMAT=<ID=GT,Number=1,... , the command should…

The task

For a VCF whose metadata includes `##fileformat=VCFv4.1` and `##FORMAT=<ID=GT,Number=1,...>`, the command should print `VCF version 4.1 detected` while processing and `Reached the end of the file` before exiting 0. It should write a quoted comma-separated CSV whose header is the VCF header with a `DUMMY` column…

Part of FineEnvs/MiMo-V2.6-RL-harbor-code.