I want an installed command named ntsynt merge collinear.py for post-processing an existing ntSynt synteny…

I want an installed command named ntsynt merge collinear.py for post-processing an existing ntSynt synteny…: a task in MiMo-V2.6-RL-harbor-code: MiMo-V2.6-RL Code (Harbor) (Harbor dataset). The command should group rows by block ID, use the first assembly encountered in the file as the reference…

The task

The command should group rows by block ID, use the first assembly encountered in the file as the reference assembly, sort blocks by that reference assembly's contig and start coordinate, and then compare each adjacent block pair across every assembly. Adjacent blocks should merge only when every assembly stays on the…

Part of FineEnvs/MiMo-V2.6-RL-harbor-code.