highly variable genes() with flavor="cell ranger" fails there are less normalized dispersions than…
highly variable genes() with flavor="cell ranger" fails there are less normalized dispersions than…: a task in MiMo-V2.6-RL-harbor-code: MiMo-V2.6-RL Code (Harbor) (Harbor dataset). If there are very few genes some of the bins in sc.pp.highly variable genes(adata, n top genes=1000, flavor="cell…
The task
If there are very few genes some of the bins in `sc.pp.highly_variable_genes(adata, n_top_genes=1000, flavor="cell_ranger")` can contain a single gene leading to `NaN` values in the normalized expression vector which are removed here…
Part of FineEnvs/MiMo-V2.6-RL-harbor-code.