Fix the Gene Extraction Pipeline
Fix the Gene Extraction Pipeline: a task in repo2rlenv-seta-seed2synth (Harbor dataset). A genomics analyst left behind a pipeline script at /pipeline/extract genes.sh that is supposed to extract BED records whose gene names appear in a target gene list, writing the result to…
The task
A genomics analyst left behind a pipeline script at `/pipeline/extract_genes.sh` that is supposed to extract BED records whose gene names appear in a target gene list, writing the result to `/pipeline/output/hg38.hgnc.goi.bed`.
Part of FineEnvs/repo2rlenv-seta-seed2synth.