You are working on the Clinical-Genomics/BALSAMIC repository. The source code is checked out at /testbed at…
You are working on the Clinical-Genomics/BALSAMIC repository. The source code is checked out at /testbed at…: a task in SWE-Lego-RL-2699 (Harbor dataset). This error has been thrown quite randomly by VarDict and causes a crash. After restarting it succeeds. So it seems quite random. I saw it…
The task
This error has been thrown quite randomly by VarDict and causes a crash. After restarting it succeeds. So it seems quite random. I saw it previously in this PR https://github.com/Clinical-Genomics/BALSAMIC/pull/1176 but misinterpreted the error. Looking at it today it seems to be related to the realignment which was…
Part of Lego-X/Lego-RL-2699.