Restore blacklist semantics in an HMMRATAC chromatin-accessibility workflow
Restore blacklist semantics in an HMMRATAC chromatin-accessibility workflow: a task in SWE-bench-Science (Harbor dataset). The supplied directory contains a pinned snapshot of MACS3, including the real HMMRATAC implementation used to infer accessible chromatin from ATAC-seq fragments. The offline…
The task
The supplied directory contains a pinned snapshot of MACS3, including the real HMMRATAC implementation used to infer accessible chromatin from ATAC-seq fragments. The offline reproduction exposes an unexpected behavior: adding a genomic exclusion mask can change model-input statistics and derived behavior on…
Part of OpenMOSS-Team/SWE-bench-Science.