Complete robust topic-to-cistrome binarization for independent probability matrices
Complete robust topic-to-cistrome binarization for independent probability matrices: a task in SWE-bench-Science (Harbor dataset). The included pycisTopic source can turn topic distributions attached to a full cisTopic model into selected cell or region sets. A downstream workflow now needs to…
The task
The included pycisTopic source can turn topic distributions attached to a full cisTopic model into selected cell or region sets. A downstream workflow now needs to consume probability matrices exported independently from topic-model training and produce the discrete topic sets used for motif enrichment and cistrome…
Part of OpenMOSS-Team/SWE-bench-Science.