You are tasked with executing a multi-step bioinformatics workflow to process a targeted sequencing dataset…
You are tasked with executing a multi-step bioinformatics workflow to process a targeted sequencing dataset…: a task in SkillNet-Gym (Harbor dataset). Step 1: Variant Calling Locate the aligned reads BAM file (ending in .bam ) in the same input directory as the provided reference files. Use…
The task
**Step 1: Variant Calling** Locate the aligned reads BAM file (ending in `.bam`) in the same input directory as the provided reference files. Use `bcftools` to call genetic variants from this BAM file against the provided reference FASTA. *(Note: You may need to rename or symlink the provided `.fai` file to exactly…
Part of zjunlp/SkillNet-Gym.