You are testing a multi-pathway bioinformatics pipeline for variant calling and downstream analysis. You are…
You are testing a multi-pathway bioinformatics pipeline for variant calling and downstream analysis. You are…: a task in SkillNet-Gym (Harbor dataset). Because we lack a sample BAM file, you must first simulate one. Note that the provided reference .gz file is in a legacy RAZF format that modern…
The task
Because we lack a sample BAM file, you must first simulate one. Note that the provided reference `.gz` file is in a legacy RAZF format that modern `htslib` tools cannot read directly. You will need to decompress and re-compress it appropriately (e.g., using `bgzip`), and re-index it using the provided `.fai` as a…
Part of zjunlp/SkillNet-Gym.