You need to build and validate a custom differential splicing workflow using synthetic RNA-seq data. Because…
You need to build and validate a custom differential splicing workflow using synthetic RNA-seq data. Because…: a task in SkillNet-Gym (Harbor dataset). Step 1: Annotation & Data Simulation Read the provided annotation file at /root/Ensembl mouse GTF.gz . Find the first transcript on chromosome 19…
The task
**Step 1: Annotation & Data Simulation** Read the provided annotation file at `/root/Ensembl_mouse_GTF.gz`. Find the first transcript on chromosome `19` (or `chr19`, depending on the GTF's seqname format) that contains exactly 3 `exon` features. 1. Save the structure of this 3-exon transcript as a BED12 file at…
Part of zjunlp/SkillNet-Gym.